BAPS : Bayesian Analysis of Population Structure
نویسندگان
چکیده
منابع مشابه
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of cheap DNA sequencing technologies. Bayesian model-based clustering is a powerful tool for detecting important patterns in such data and can be used to decipher even quite subtle signals of systematic differences in molecular variation. Here, we introduce two upgrades to the Bayesian Analysis of Popul...
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UNLABELLED Enterococcus faecium has recently emerged as an important multiresistant nosocomial pathogen. Defining population structure in this species is required to provide insight into the existence, distribution, and dynamics of specific multiresistant or pathogenic lineages in particular environments, like the hospital. Here, we probe the population structure of E. faecium using Bayesian-ba...
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Methods Nuclear microsatellite variation was assayed in multiple populations (1179 trees, 21 locations, 6–13 locations per species) in Jacaranda copaia (Bignoniaceae), Luehea seemannii (Malvaceae), Simarouba amara (Simaroubaceae) and Symphonia globulifera (Clusiaceae). Population structure was analysed using FST-based statistics and a Bayesian clustering approach (baps). Bayesian coalescent met...
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1. Spatial clustering of DNA sequences, output can be directly integrated with Google Maps using OEŞŞŚĤ;;ššš:ŝŚŋŞoeŋŖŏŚoeŎŏŗoeřŖřőţ:ŘŏŞ;. 2. Trained clustering (i.e. semi-supervised classification) of DNA sequence data. 3. Tandem command line program hierBAPS for clustering DNA sequence data in a hierarchical manner and for visualization of the results up to whole genome scale.
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Bayesian statistical methods for the estimation of hidden genetic structure of populations have gained considerable popularity in the recent years. Utilizing molecular marker data, Bayesian mixture models attempt to identify a hidden population structure by clustering individuals into genetically divergent groups, whereas admixture models target at separating the ancestral sources of the allele...
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